Package `thunderfish`

Algorithms and programs for analysing electric field recordings of weakly electric fish.

Expand source code

"""
Algorithms and programs for analysing electric field recordings of
weakly electric fish.
"""

import sys

# avoid double inclusion of audioio modules if called as modules,
# e.g. python -m thunderfish.datawriter`:
if len(sys.argv) > 0 and sys.argv[0] != '-m':

    from .version import __version__

    # somehow pdoc3 gets confused by this:
    #__all__ = ['thunderfish',
    #           'dataloader',
    #           'datawriter',
    #           'tabledata',
    #           'configfile',
    #           'eventdetection',
    #           'bestwindow',
    #           'powerspectrum',
    #           'harmonics',
    #           'checkpulse',
    #           'consistentfishes',
    #           'eodanalysis',
    #           'voronoi',
    #           'fakefish']

Sub-modules

thunderfish.bestwindow: Select the best region within a recording with the most stable signal of largest amplitude that is not clipped …
thunderfish.checkpulse: Check for pulse-type weakly electric fish …
thunderfish.chirp: Detection of chirps in weakly electric fish recordings …
thunderfish.collectfish: Collect data generated by thunderfish in a wavefish and a pulsefish table.
thunderfish.consistentfishes: Compare fishlists created by the harmonics module in order to create a fishlist with fishes present in all fishlists …
thunderfish.efield: Simulations of spatial electric fields …
thunderfish.eodanalysis: Analysis of EOD waveforms …
thunderfish.eodexplorer: View and explore properties of EOD waveforms.
thunderfish.fakefish: Simulate EOD waveforms …
thunderfish.fishfinder
thunderfish.fishshapes: Manipulate and plot fish outlines …
thunderfish.harmonics: Extract and analyze harmonic frequencies from power spectra …
thunderfish.hopkinsloader: Load EODs from Hopkins files …
thunderfish.pulseplots: Plot and save key steps in pulses.py for visualizing the alorithm.
thunderfish.pulses: Extract and cluster EOD waverforms of pulse-type electric fish …
thunderfish.pulsetracker: by Dexter Frueh
thunderfish.thunderbrowse
thunderfish.thunderfish: thunderfish …
thunderfish.thunderlogger: thunderlogger …
thunderfish.version