| src/thunderfish/__init__.py |
(no function) |
|
3 |
0 |
0 |
|
100% |
| src/thunderfish/audianthunder.py |
TimePlot.__init__ |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.toggle_time_range |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.zoom_time_in |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.zoom_time_out |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.move_backward |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.move_forward |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.home |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.end |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TimePlot.onpick |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TracePlot.__init__ |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TracePlot.zoom_ampl_in |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TracePlot.zoom_ampl_out |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
RatePlot.__init__ |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
RatePlot.zoom_rate_in |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
RatePlot.zoom_rate_out |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.__init__ |
|
29 |
29 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.zoom_freq_in |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.zoom_freq_out |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.onpick |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.onpress |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.onmove |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.onrelease |
|
34 |
34 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
PowerPlot.clear |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
FrequenciesPlot.__init__ |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
FrequenciesPlot.onrelease |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
EODPlot.__init__ |
|
20 |
20 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
EODPlot.synthesize |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
EODPlot.play |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TeeStringIO.__init__ |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
TeeStringIO.write |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.__init__ |
|
123 |
123 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.marker_icon |
|
20 |
20 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.resizeEvent |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.toggle_maximize |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.toggle_fullscreen |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.save |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.play |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.play_fish |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.home |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.back |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.forward |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.zoom |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.pan |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.toggle_trace |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.toggle_rate |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.dispatch_trace |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.toggle_trace_rate |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.toggle_spec |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.setup_toolbar |
|
128 |
128 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.raise_fish |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.raise_and_play |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishDialog.play_interval |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishAnalyzer.__init__ |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
ThunderfishAnalyzer.analyze |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
audian_analyzer |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
main |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/audianthunder.py |
(no function) |
|
120 |
120 |
0 |
|
0% |
| src/thunderfish/bestwindow.py |
clip_amplitudes |
|
29 |
6 |
0 |
|
79% |
| src/thunderfish/bestwindow.py |
plot_clipping |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/bestwindow.py |
add_clip_config |
|
6 |
0 |
0 |
|
100% |
| src/thunderfish/bestwindow.py |
clip_args |
|
4 |
0 |
0 |
|
100% |
| src/thunderfish/bestwindow.py |
best_window_indices |
|
68 |
10 |
0 |
|
85% |
| src/thunderfish/bestwindow.py |
best_window_times |
|
2 |
0 |
0 |
|
100% |
| src/thunderfish/bestwindow.py |
best_window |
|
2 |
0 |
0 |
|
100% |
| src/thunderfish/bestwindow.py |
plot_best_window |
|
29 |
1 |
0 |
|
97% |
| src/thunderfish/bestwindow.py |
plot_data_window |
|
15 |
2 |
0 |
|
87% |
| src/thunderfish/bestwindow.py |
add_best_window_config |
|
11 |
0 |
0 |
|
100% |
| src/thunderfish/bestwindow.py |
best_window_args |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/bestwindow.py |
analysis_window |
|
59 |
10 |
0 |
|
83% |
| src/thunderfish/bestwindow.py |
main |
|
30 |
5 |
0 |
|
83% |
| src/thunderfish/bestwindow.py |
(no function) |
|
26 |
5 |
0 |
|
81% |
| src/thunderfish/checkpulse.py |
check_pulse |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/checkpulse.py |
check_pulse.ratio |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/checkpulse.py |
add_check_pulse_config |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/checkpulse.py |
check_pulse_args |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/checkpulse.py |
(no function) |
|
28 |
28 |
0 |
|
0% |
| src/thunderfish/chirp.py |
true_chirp_power_drop |
|
13 |
13 |
0 |
|
0% |
| src/thunderfish/chirp.py |
true_chirp_power_rise_above |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/chirp.py |
chirp_detection |
|
29 |
29 |
0 |
|
0% |
| src/thunderfish/chirp.py |
chirp_detection_plot |
|
12 |
12 |
0 |
|
0% |
| src/thunderfish/chirp.py |
chirp_analysis |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/chirp.py |
(no function) |
|
17 |
17 |
0 |
|
0% |
| src/thunderfish/collectfish.py |
collect_fish |
|
288 |
288 |
0 |
|
0% |
| src/thunderfish/collectfish.py |
collect_fish.file_iter |
|
13 |
13 |
0 |
|
0% |
| src/thunderfish/collectfish.py |
collect_fish.find_recording |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/collectfish.py |
rangestr |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/collectfish.py |
main |
|
110 |
110 |
0 |
|
0% |
| src/thunderfish/collectfish.py |
(no function) |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/efield.py |
efish_monopoles |
|
24 |
24 |
0 |
|
0% |
| src/thunderfish/efield.py |
object_monopoles |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/efield.py |
epotential |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/efield.py |
epotential_meshgrid |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/efield.py |
efield |
|
13 |
13 |
0 |
|
0% |
| src/thunderfish/efield.py |
efield_meshgrid |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/efield.py |
projection |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/efield.py |
fieldline |
|
24 |
24 |
0 |
|
0% |
| src/thunderfish/efield.py |
squareroot_transform |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/efield.py |
plot_fieldlines |
|
32 |
32 |
0 |
|
0% |
| src/thunderfish/efield.py |
main |
|
28 |
28 |
0 |
|
0% |
| src/thunderfish/efield.py |
(no function) |
|
16 |
16 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
detect_eods |
|
192 |
192 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
eod_waveform |
|
29 |
10 |
0 |
|
66% |
| src/thunderfish/eodanalysis.py |
adjust_eodf |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
unfilter |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
unfilter_coeff |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
load_species_waveforms |
|
43 |
43 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
wave_similarity |
|
48 |
48 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
pulse_similarity |
|
30 |
30 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
clipped_fraction |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
plot_eod_recording |
|
22 |
22 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
zoom_eod_recording |
|
29 |
29 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
plot_eod_snippets |
|
16 |
16 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
save_eod_waveform |
|
12 |
12 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
load_eod_waveform |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
save_analysis |
|
37 |
37 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
save_analysis.write_file_zip |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
load_analysis |
|
76 |
76 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
load_recording |
|
50 |
50 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
add_eod_analysis_config |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
eod_waveform_args |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
add_species_config |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
add_eod_quality_config |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
main |
|
16 |
16 |
0 |
|
0% |
| src/thunderfish/eodanalysis.py |
(no function) |
|
61 |
1 |
0 |
|
98% |
| src/thunderfish/eodexplorer.py |
EODExplorer.__init__ |
|
57 |
57 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
EODExplorer.__init__.get_spectra |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
EODExplorer.fix_scatter_plot |
|
40 |
40 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
EODExplorer.fix_waveform_plot |
|
55 |
55 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
EODExplorer.list_selection |
|
24 |
24 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
EODExplorer.analyze_selection |
|
32 |
32 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
EODExplorer.select_EOD_properties |
|
97 |
97 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
load_waveform |
|
32 |
32 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
main |
|
108 |
108 |
0 |
|
0% |
| src/thunderfish/eodexplorer.py |
(no function) |
|
47 |
47 |
0 |
|
0% |
| src/thunderfish/fakefish.py |
abbrv_genus |
|
2 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
wavefish_spectrum |
|
33 |
6 |
0 |
|
82% |
| src/thunderfish/fakefish.py |
wavefish_eods |
|
12 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
normalize_wavefish |
|
14 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
export_wavefish |
|
45 |
3 |
0 |
|
93% |
| src/thunderfish/fakefish.py |
chirps |
|
23 |
4 |
0 |
|
83% |
| src/thunderfish/fakefish.py |
rises |
|
14 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
pulsefish_phases |
|
17 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
pulsefish_spectrum |
|
8 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
pulsefish_waveform |
|
5 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
pulsefish_eods |
|
20 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
normalize_pulsefish |
|
12 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
export_pulsefish |
|
56 |
2 |
0 |
|
96% |
| src/thunderfish/fakefish.py |
generate_waveform |
|
64 |
1 |
0 |
|
98% |
| src/thunderfish/fakefish.py |
generate_testfiles |
|
98 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
demo |
|
60 |
0 |
0 |
|
100% |
| src/thunderfish/fakefish.py |
main |
|
19 |
6 |
0 |
|
68% |
| src/thunderfish/fakefish.py |
(no function) |
|
38 |
2 |
0 |
|
95% |
| src/thunderfish/files.py |
parse_filename |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/files.py |
open_from_zip |
|
12 |
12 |
0 |
|
0% |
| src/thunderfish/files.py |
close_zip |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/files.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| src/thunderfish/fishfinder.py |
SignalPlot.__init__ |
|
101 |
101 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.__del__ |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.remove_peak_annotation |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.annotate_peak |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.annotate_fish |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.update_plots |
|
124 |
124 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.keypress |
|
221 |
221 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.buttonpress |
|
34 |
34 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.onpick |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.resize |
|
14 |
14 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.plot_waveform |
|
26 |
26 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.play_segment |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.save_segment |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.play_all |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
SignalPlot.play_tone |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
short_user_warning |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
main |
|
28 |
28 |
0 |
|
0% |
| src/thunderfish/fishfinder.py |
(no function) |
|
37 |
37 |
0 |
|
0% |
| src/thunderfish/fishshapes.py |
fish_shape |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
plot_fish |
|
33 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
plot_object |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
plot_fishfinder |
|
25 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
plot_pathes |
|
14 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
fish_surface |
|
38 |
1 |
0 |
|
97% |
| src/thunderfish/fishshapes.py |
surface_normals |
|
9 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
extract_path |
|
9 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
bbox_pathes |
|
14 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
translate_pathes |
|
3 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
center_pathes |
|
4 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
rotate_pathes |
|
6 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
flipx_pathes |
|
2 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
flipy_pathes |
|
2 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
mirror_path |
|
4 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
normalize_path |
|
6 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
bend_path |
|
12 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
export_path |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
export_fish |
|
10 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
export_fish_demo |
|
17 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
main |
|
37 |
0 |
0 |
|
100% |
| src/thunderfish/fishshapes.py |
(no function) |
|
47 |
1 |
0 |
|
98% |
| src/thunderfish/freqanalysis.py |
freq_diffs |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/freqanalysis.py |
freq_ratios |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/freqanalysis.py |
freq_intervals |
|
18 |
18 |
0 |
|
0% |
| src/thunderfish/freqanalysis.py |
plot_freq_diffs |
|
15 |
15 |
0 |
|
0% |
| src/thunderfish/freqanalysis.py |
plot_freq_ratios |
|
14 |
14 |
0 |
|
0% |
| src/thunderfish/freqanalysis.py |
plot_musical_intervals |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/freqanalysis.py |
(no function) |
|
12 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
group_candidate |
|
98 |
16 |
0 |
|
84% |
| src/thunderfish/harmonics.py |
update_group |
|
26 |
1 |
0 |
|
96% |
| src/thunderfish/harmonics.py |
build_harmonic_group |
|
54 |
9 |
0 |
|
83% |
| src/thunderfish/harmonics.py |
retrieve_harmonic_group |
|
14 |
7 |
0 |
|
50% |
| src/thunderfish/harmonics.py |
expand_group |
|
28 |
4 |
0 |
|
86% |
| src/thunderfish/harmonics.py |
extract_fundamentals |
|
83 |
23 |
0 |
|
72% |
| src/thunderfish/harmonics.py |
threshold_estimate |
|
8 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
harmonic_groups |
|
35 |
3 |
0 |
|
91% |
| src/thunderfish/harmonics.py |
fundamental_freqs |
|
14 |
1 |
0 |
|
93% |
| src/thunderfish/harmonics.py |
fundamental_freqs_and_power |
|
16 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
add_relative_power |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
add_power_ranks |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
similar_indices |
|
31 |
7 |
0 |
|
77% |
| src/thunderfish/harmonics.py |
unique_indices |
|
23 |
7 |
0 |
|
70% |
| src/thunderfish/harmonics.py |
collapse |
|
9 |
1 |
0 |
|
89% |
| src/thunderfish/harmonics.py |
consistent |
|
22 |
7 |
0 |
|
68% |
| src/thunderfish/harmonics.py |
closest |
|
73 |
22 |
0 |
|
70% |
| src/thunderfish/harmonics.py |
unique_mask |
|
27 |
4 |
0 |
|
85% |
| src/thunderfish/harmonics.py |
unique |
|
24 |
7 |
0 |
|
71% |
| src/thunderfish/harmonics.py |
colors_markers |
|
24 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
plot_harmonic_groups |
|
60 |
12 |
0 |
|
80% |
| src/thunderfish/harmonics.py |
plot_psd_harmonic_groups |
|
13 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
annotate_harmonic_group |
|
21 |
6 |
0 |
|
71% |
| src/thunderfish/harmonics.py |
plot_selected_groups |
|
20 |
2 |
0 |
|
90% |
| src/thunderfish/harmonics.py |
plot_unique_frequencies |
|
10 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
add_psd_peak_detection_config |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
psd_peak_detection_args |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
add_harmonic_groups_config |
|
14 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
harmonic_groups_args |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
main |
|
109 |
5 |
0 |
|
95% |
| src/thunderfish/harmonics.py |
main.mkg |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/harmonics.py |
(no function) |
|
45 |
5 |
0 |
|
89% |
| src/thunderfish/hopkinsloader.py |
load_hopkins |
|
41 |
41 |
0 |
|
0% |
| src/thunderfish/hopkinsloader.py |
analyse_hopkins |
|
27 |
27 |
0 |
|
0% |
| src/thunderfish/hopkinsloader.py |
(no function) |
|
20 |
20 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
condition_pulse |
|
87 |
36 |
0 |
|
59% |
| src/thunderfish/pulseanalysis.py |
condition_pulse.mode |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse_properties |
|
29 |
5 |
0 |
|
83% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse_phases |
|
71 |
12 |
0 |
|
83% |
| src/thunderfish/pulseanalysis.py |
gaussian_sum |
|
4 |
0 |
0 |
|
100% |
| src/thunderfish/pulseanalysis.py |
gaussian_sum_spectrum |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/pulseanalysis.py |
gaussian_sum_costs |
|
13 |
0 |
0 |
|
100% |
| src/thunderfish/pulseanalysis.py |
decompose_pulse |
|
47 |
16 |
0 |
|
66% |
| src/thunderfish/pulseanalysis.py |
exp_decay |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse_tail |
|
69 |
31 |
0 |
|
55% |
| src/thunderfish/pulseanalysis.py |
pulse_spectrum |
|
26 |
2 |
0 |
|
92% |
| src/thunderfish/pulseanalysis.py |
pulsetrain |
|
39 |
39 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
pulsetrain_spectrum |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse_spectrum |
|
15 |
0 |
0 |
|
100% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse_intervals |
|
13 |
5 |
0 |
|
62% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse |
|
94 |
7 |
0 |
|
93% |
| src/thunderfish/pulseanalysis.py |
pulse_quality |
|
19 |
19 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
plot_pulse_eodtimes |
|
51 |
51 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
plot_pulse_rate |
|
46 |
46 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
plot_pulse_eod |
|
307 |
198 |
0 |
|
36% |
| src/thunderfish/pulseanalysis.py |
plot_pulse_spectrum |
|
53 |
16 |
0 |
|
70% |
| src/thunderfish/pulseanalysis.py |
plot_pulse_distribution |
|
27 |
27 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
save_pulse_fish |
|
64 |
64 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
load_pulse_fish |
|
39 |
39 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
save_pulse_spectrum |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
load_pulse_spectrum |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
save_pulse_phases |
|
19 |
19 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
load_pulse_phases |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
save_pulse_gaussians |
|
12 |
12 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
load_pulse_gaussians |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
save_pulse_times |
|
15 |
15 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
load_pulse_times |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
add_analyze_pulse_config |
|
14 |
14 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
analyze_pulse_args |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
pulse_quality_args |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
main |
|
27 |
27 |
0 |
|
0% |
| src/thunderfish/pulseanalysis.py |
(no function) |
|
51 |
3 |
0 |
|
94% |
| src/thunderfish/pulseplots.py |
warn |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
darker |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
lighter |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
xscalebar |
|
53 |
53 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
yscalebar |
|
53 |
53 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
arrowed_spines |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
loghist |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
plot_all |
|
19 |
19 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
plot_clustering |
|
119 |
119 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
plot_bgm |
|
55 |
55 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
plot_feature_extraction |
|
55 |
55 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
plot_moving_fish |
|
46 |
46 |
0 |
|
0% |
| src/thunderfish/pulseplots.py |
(no function) |
|
71 |
71 |
0 |
|
0% |
| src/thunderfish/pulses.py |
warn |
|
1 |
0 |
0 |
|
100% |
| src/thunderfish/pulses.py |
unique_counts |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/pulses.py |
extract_pulsefish |
|
54 |
54 |
0 |
|
0% |
| src/thunderfish/pulses.py |
detect_pulses |
|
56 |
56 |
0 |
|
0% |
| src/thunderfish/pulses.py |
assign_side_peaks |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/pulses.py |
cluster |
|
197 |
197 |
0 |
|
0% |
| src/thunderfish/pulses.py |
BGM |
|
25 |
25 |
0 |
|
0% |
| src/thunderfish/pulses.py |
merge_gaussians |
|
37 |
37 |
0 |
|
0% |
| src/thunderfish/pulses.py |
plot_bgm_cluster |
|
29 |
29 |
0 |
|
0% |
| src/thunderfish/pulses.py |
extract_snippets |
|
56 |
56 |
0 |
|
0% |
| src/thunderfish/pulses.py |
extract_snippet_features |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/pulses.py |
cluster_on_shape |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/pulses.py |
subtract_slope |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/pulses.py |
remove_artefacts |
|
29 |
29 |
0 |
|
0% |
| src/thunderfish/pulses.py |
delete_unreliable_fish |
|
18 |
18 |
0 |
|
0% |
| src/thunderfish/pulses.py |
delete_wavefish_and_sidepeaks |
|
36 |
36 |
0 |
|
0% |
| src/thunderfish/pulses.py |
merge_clusters |
|
33 |
33 |
0 |
|
0% |
| src/thunderfish/pulses.py |
extract_mean_waveforms |
|
30 |
30 |
0 |
|
0% |
| src/thunderfish/pulses.py |
delete_moving_fish |
|
70 |
70 |
0 |
|
0% |
| src/thunderfish/pulses.py |
remove_sparse_detections |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/pulses.py |
add_extract_pulsefish_config |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/pulses.py |
extract_pulsefish_args |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/pulses.py |
(no function) |
|
50 |
8 |
0 |
|
84% |
| src/thunderfish/pulsetracker.py |
makeeventlist |
|
38 |
38 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
discardnearbyevents |
|
21 |
21 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
crosscorrelation |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
interpol |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
interpolated_array |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
cut_snippets |
|
33 |
33 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
pc |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
chebyshev |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
dbscan |
|
8 |
8 |
1 |
|
0% |
| src/thunderfish/pulsetracker.py |
cluster_events |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
Peaklist.__init__ |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
connect_blocks |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
alignclusterlabels |
|
18 |
18 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
ampwalkclassify3_refactor |
|
127 |
127 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
discard_wave_pulses |
|
21 |
21 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
plot_events_on_data |
|
16 |
16 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
discard_short_classes |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
path_leaf |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
save_EOD_events_to_npmmp |
|
7 |
7 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
create_threshold_array |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
alignlabels |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
analyze_pulse_data |
|
136 |
136 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
main |
|
2 |
2 |
0 |
|
0% |
| src/thunderfish/pulsetracker.py |
(no function) |
|
45 |
45 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.__init__ |
|
193 |
193 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.__del__ |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.plot_pulses |
|
23 |
23 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.plot_pulses.plot_pulse_traces |
|
13 |
13 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.update_plots |
|
18 |
18 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.on_pick |
|
60 |
60 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.resize |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.keypress |
|
144 |
144 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.play_segment |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.play_all |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.save_segment |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
SignalPlot.plot_traces |
|
39 |
39 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
short_user_warning |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
main |
|
25 |
25 |
0 |
|
0% |
| src/thunderfish/thunderbrowse.py |
(no function) |
|
28 |
28 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
configuration |
|
22 |
22 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
save_configuration |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
remove_eod_files |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_style |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
axes_style |
|
4 |
4 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods |
|
196 |
196 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.keypress |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.recording_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.recordingzoom_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.psd_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.meaneod_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.ampl_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.phase_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eods.pulsepsd_format_coord |
|
1 |
1 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
plot_eod_subplots |
|
165 |
165 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
thunderfish_plot |
|
63 |
63 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
thunderfish |
|
103 |
103 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
run_thunderfish |
|
17 |
17 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
main |
|
139 |
139 |
0 |
|
0% |
| src/thunderfish/thunderfish.py |
(no function) |
|
75 |
75 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
add_thunderlogger_config |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
extract_eods |
|
104 |
104 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
save_times |
|
14 |
14 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
load_times |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
save_power |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
load_power |
|
17 |
17 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
save_data |
|
29 |
29 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
load_data |
|
61 |
61 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
plot_signal_power |
|
28 |
28 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
merge_fish |
|
32 |
32 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
plot_eod_occurances |
|
64 |
64 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
main |
|
119 |
119 |
0 |
|
0% |
| src/thunderfish/thunderlogger.py |
(no function) |
|
39 |
39 |
0 |
|
0% |
| src/thunderfish/version.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| src/thunderfish/waveanalysis.py |
extract_wave |
|
162 |
162 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
extract_wave.fourier_freq_range |
|
13 |
13 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
condition_wave |
|
52 |
23 |
0 |
|
56% |
| src/thunderfish/waveanalysis.py |
analyze_wave_properties |
|
27 |
5 |
0 |
|
81% |
| src/thunderfish/waveanalysis.py |
analyze_wave_phases |
|
52 |
4 |
0 |
|
92% |
| src/thunderfish/waveanalysis.py |
analyze_wave_spectrum |
|
42 |
21 |
0 |
|
50% |
| src/thunderfish/waveanalysis.py |
analyze_wave |
|
67 |
13 |
0 |
|
81% |
| src/thunderfish/waveanalysis.py |
wave_quality |
|
58 |
58 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
plot_wave_eod |
|
112 |
77 |
0 |
|
31% |
| src/thunderfish/waveanalysis.py |
plot_wave_spectrum |
|
38 |
3 |
0 |
|
92% |
| src/thunderfish/waveanalysis.py |
plot_wave_spectrum.pi_fmt |
|
8 |
0 |
0 |
|
100% |
| src/thunderfish/waveanalysis.py |
save_wave_eodfs |
|
9 |
9 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
load_wave_eodfs |
|
11 |
11 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
save_wave_fish |
|
52 |
52 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
load_wave_fish |
|
32 |
32 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
save_wave_phases |
|
16 |
16 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
load_wave_phases |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
save_wave_spectrum |
|
10 |
10 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
load_wave_spectrum |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
add_extract_wave_config |
|
8 |
8 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
extract_wave_args |
|
6 |
6 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
add_analyze_wave_config |
|
5 |
5 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
analyze_wave_args |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
wave_quality_args |
|
3 |
3 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
main |
|
20 |
20 |
0 |
|
0% |
| src/thunderfish/waveanalysis.py |
(no function) |
|
43 |
3 |
0 |
|
93% |